Asp.net Publishing Broke Site - "App_WebReferences is not allowed because the application is precompiled"

When publishing site to live, trying to go to site gives a Server Error – Runtime Error.  Looking in the Application logs on the server  gave "The directory App_WebReferences/ is not allowed because the application is precompiled."  This was causing a bit of stress to a programmer in a our company since he tried to publish a change during business ours.  

Solution
http://stackoverflow.com/questions/9892646/how-publish-my-web-site

When publishing the options that work are to have “Delete all existing files prior to publish”, and “Precompile during publishing” checked.  And “Exclude files from the App_Data” unchecked.

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